Knowledgebase · FAIRsharing
Rhea
ELIXIR Compounds and reactions
Rhea is a comprehensive and non-redundant resource of expert-curated chemical and transport reactions of biological interest. Rhea can be used for enzyme annotation, genome-scale metabolic modeling and omics-related analysis. Rhea describes enzyme-catalyzed reactions covering the IUBMB Enzyme Nomenclature list as well as additional reactions, including spontaneously occurring reactions. Rhea is built on ChEBI (Chemical Entities of Biological Interest) ontology of small molecules to describe its reaction participants. Since December 2018, Rhea is the standard for enzyme annotation in UniProt.
- Website
- Record in FAIRsharing (doi:10.25504/FAIRsharing.pn1sr5)
- Service of ELIXIR: Rhea
- Subjects: Biochemistry, Life Science
Documentation, events and training
bio.tools API and tool documentation
- Rhea (same homepage)
TeSS Training materials (1)
TeSS Events (6)
- Mining enzyme data in UniProtKB using Rhea (practicals) - streamed 2022-03-04
- Mining enzyme data in UniProtKB using Rhea (practicals) - streamed 2022-03-03
- Mining enzyme data in UniProtKB using Rhea 2022-02-24
- Mining enzyme data in UniProtKB using Rhea - streamed 2021-10-22
- ELIXIR Fluxomics Training School 2021 2021-10-04
- Enzymes in UniProt 2019-05-01
What is known per question
The questions of the decision tree, with what FAIRsharing says about this repository. ✓ supported, ✗ excluded, ? not known. Your own answers are marked.
What kind of data do you want to archive?
- ? Spectra
- ? Crystal structures
- ? Computational chemistry
- ? Catalysis
- ✓ Compounds and reactions
- ? Bioassays and chemical biology
- ? Materials and polymers
- ? Images and microscopy
- ? Something else
Subjects: Biochemistry; Life Science
Domains: Annotation; Biocuration; Chemical formula; Reaction data; chemical entity; curated information; enzymatic reaction; small molecule; transport
Does the journal or publisher you publish with require or recommend a repository?
- ? Yes
- ? No
- ? I do not know
FAIRsharing has no information on this.
Which discipline does your data belong to?
FAIRsharing has no information on this.
Which publisher?
FAIRsharing has no information on this.
Does your funder have requirements for where data is archived?
- ? Yes
- ? No
- ? I do not know
FAIRsharing has no information on this.
Which funder?
FAIRsharing has no information on this.
Does your institution offer a data repository?
- ? Yes
- ? No
- ? I do not know
FAIRsharing has no information on this.
Which institution?
FAIRsharing has no information on this.
Can your data be shared openly?
- ✓ Yes, openly available
- ? Yes, after an embargo
- ✗ Only with restrictions
Data access: open
Data deposition: not applicable
How large is your dataset?
- ? Less than 1 GB
- ? 1 GB to 50 GB
- ? 50 GB to 1 TB
- ? More than 1 TB
FAIRsharing has no information on this.
Why can the data not be open?
- ? It contains personal data
- ? Commercial or intellectual property reasons
- ? Safety or security concerns
- ? A data sharing agreement limits it
FAIRsharing has no information on this.
Under which license do you want to share the data?
- ? CC0 / public domain
- ✓ CC BY
- ? Another open license
- ? Not decided yet
Licences: Creative Commons Attribution 4.0 International (CC BY 4.0)
Do you need a persistent identifier, such as a DOI, for citing the data?
- ? Yes, a DOI
- ? Any persistent identifier will do
- ? No
FAIRsharing has no information on this.
Must the data be stored in a specific region?
- ✗ In the European Union
- ? In a specific country
- ✓ No preference
Country: Switzerland
Must archiving be free of charge?
- ? Yes, free only
- ? A fee is fine
FAIRsharing has no information on this.
Which country?
✓ 1 of 15 in the list ✗ excludes 14
Country: Switzerland