Knowledgebase · FAIRsharing
WikiPathways
WikiPathways is an open, collaborative platform dedicated to the curation of biological pathways. WikiPathways was established to facilitate the contribution and maintenance of pathway information by the biology community.
- Website
- Record in FAIRsharing (doi:10.25504/FAIRsharing.1x53qk)
- Subjects: Life Science, Metabolomics
Documentation, events and training
bio.tools API and tool documentation
- WikiPathways API documentation (same homepage)
TeSS Training materials (4)
- Information about chemicals (linked to the bio.tools entry)
- SPARQL endpoints at BiGCaT
- WikiPathways Academy (linked to the bio.tools entry)
- How to make a new pathway for WikiPathways using PathVisio
What is known per question
The questions of the decision tree, with what FAIRsharing says about this repository. ✓ supported, ✗ excluded, ? not known. Your own answers are marked.
What kind of data do you want to archive?
- ? Spectra
- ? Crystal structures
- ? Computational chemistry
- ? Catalysis
- ? Compounds and reactions
- ? Bioassays and chemical biology
- ? Materials and polymers
- ? Images and microscopy
- ? Something else
Subjects: Life Science; Metabolomics
Domains: pathway
Does the journal or publisher you publish with require or recommend a repository?
- ? Yes
- ? No
- ? I do not know
Recommended by: AHA/ASA journals - Circulation Research - Data and Materials Sharing
Which discipline does your data belong to?
FAIRsharing has no information on this.
Which publisher?
FAIRsharing has no information on this.
Does your funder have requirements for where data is archived?
- ? Yes
- ? No
- ? I do not know
Recommended by: AHA/ASA journals - Circulation Research - Data and Materials Sharing
Which funder?
FAIRsharing has no information on this.
Does your institution offer a data repository?
- ? Yes
- ? No
- ? I do not know
Organisations: Gladstone Institutes (maintains); National Institute of General Medical Sciences (funds); National Institute of General Medical Sciences (funds); Department of Bioinformatics, Universiteit Maastricht (maintains); European Commission FP7 (funds); National Institute of General Medical Sciences (funds); National Institutes of Health (funds); National Institutes of Health (funds)
Which institution?
FAIRsharing has no information on this.
Can your data be shared openly?
- ✓ Yes, openly available
- ? Yes, after an embargo
- ✗ Only with restrictions
Data access: open: The pathway content at WikiPathways is freely available for download in a variety of data and image formats
Data deposition: controlled
How large is your dataset?
- ? Less than 1 GB
- ? 1 GB to 50 GB
- ? 50 GB to 1 TB
- ? More than 1 TB
FAIRsharing has no information on this.
Why can the data not be open?
- ? It contains personal data
- ? Commercial or intellectual property reasons
- ? Safety or security concerns
- ? A data sharing agreement limits it
FAIRsharing has no information on this.
Under which license do you want to share the data?
- ✓ CC0 / public domain
- ? CC BY
- ? Another open license
- ? Not decided yet
Licences: Apache License 2.0; Creative Commons CC0 1.0 Universal (CC0 1.0) Public Domain Dedication
Do you need a persistent identifier, such as a DOI, for citing the data?
- ? Yes, a DOI
- ? Any persistent identifier will do
- ? No
FAIRsharing has no information on this.
Must the data be stored in a specific region?
- ? In the European Union
- ? In a specific country
- ✓ No preference
Country: Netherlands; United Kingdom; United States
Must archiving be free of charge?
- ? Yes, free only
- ? A fee is fine
FAIRsharing has no information on this.
Which country?
✓ 3 of 15 in the list ✗ excludes 12
Country: Netherlands; United Kingdom; United States