Knowledgebase · FAIRsharing
Reactome
ELIXIR Compounds and reactions
The cornerstone of Reactome is a freely available, open source relational database of signaling and metabolic molecules and their relations organized into biological pathways and processes. The core unit of the Reactome data model is the reaction. Entities (nucleic acids, proteins, complexes, vaccines, anti-cancer therapeutics and small molecules) participating in reactions form a network of biological interactions and are grouped into pathways. Examples of biological pathways in Reactome include classical intermediary metabolism, signaling, transcriptional regulation, apoptosis and disease. Inferred orthologous reactions are available for 15 non-human species including mouse, rat, chicken, zebrafish, worm, fly, and yeast.
- Website
- Record in FAIRsharing (doi:10.25504/FAIRsharing.tf6kj8)
- Service of ELIXIR: Reactome
- Subjects: Epidemiology, Genomics, Life Science, Metabolomics, Proteomics, Transcriptomics, Virology
Documentation, events and training
bio.tools API and tool documentation
- Reactome (same homepage)
TeSS Training materials (4)
- Reactome: Exploring biological pathways
- Reactome: Quick tour
- Reactome: Tools for analysing biological pathways
- Pathway and Network Analysis 2014 Module 4 - Pathway and Network Analysis
TeSS Events (24)
- Bioinformatics for immunologists 2026-07-13
- Small molecule chemistry: from proteins to pathways 2024-11-28
- Bioinformatics for immunologists 2024-07-01
- Mathematics of life: modelling molecular mechanisms 2024-03-11
- Proteomics bioinformatics 2023-07-03
- Bioinformatics resources for protein biology 2023-04-25
- Bioinformatics resources for protein biology 2022-02-21
- CABANA Virtual Workshop: Exploring biological networks and its application in health and disease 2021-11-08
- Mathematics of life: Modelling molecular mechanisms 2021-09-27
- Bioinformatics for Immunologists 2021-09-27
- and 14 more
What is known per question
The questions of the decision tree, with what FAIRsharing says about this repository. ✓ supported, ✗ excluded, ? not known. Your own answers are marked.
What kind of data do you want to archive?
- ? Spectra
- ? Crystal structures
- ? Computational chemistry
- ? Catalysis
- ✓ Compounds and reactions
- ? Bioassays and chemical biology
- ? Materials and polymers
- ? Images and microscopy
- ? Something else
Subjects: Epidemiology; Genomics; Life Science; Metabolomics; Proteomics; Transcriptomics; Virology
Domains: Data analysis; Protein interactions; Reaction data; biological regulation; curated information; disease; drug interaction; genetic interaction (sensu unexpected); molecular interaction; pathway; signaling
Does the journal or publisher you publish with require or recommend a repository?
- ? Yes
- ? No
- ? I do not know
FAIRsharing has no information on this.
Which discipline does your data belong to?
FAIRsharing has no information on this.
Which publisher?
FAIRsharing has no information on this.
Does your funder have requirements for where data is archived?
- ? Yes
- ? No
- ? I do not know
FAIRsharing has no information on this.
Which funder?
FAIRsharing has no information on this.
Does your institution offer a data repository?
- ? Yes
- ? No
- ? I do not know
FAIRsharing has no information on this.
Which institution?
FAIRsharing has no information on this.
Can your data be shared openly?
- ✓ Yes, openly available
- ? Yes, after an embargo
- ✗ Only with restrictions
Data access: open
Data deposition: not applicable
How large is your dataset?
- ? Less than 1 GB
- ? 1 GB to 50 GB
- ? 50 GB to 1 TB
- ? More than 1 TB
FAIRsharing has no information on this.
Why can the data not be open?
- ? It contains personal data
- ? Commercial or intellectual property reasons
- ? Safety or security concerns
- ? A data sharing agreement limits it
FAIRsharing has no information on this.
Under which license do you want to share the data?
- ✓ CC0 / public domain
- ✓ CC BY
- ? Another open license
- ? Not decided yet
Licences: Creative Commons CC0 1.0 Universal (CC0 1.0) Public Domain Dedication; Creative Commons Attribution 4.0 International (CC BY 4.0); Reactome Licence Agreement
Do you need a persistent identifier, such as a DOI, for citing the data?
- ? Yes, a DOI
- ? Any persistent identifier will do
- ? No
FAIRsharing has no information on this.
Must the data be stored in a specific region?
- ✗ In the European Union
- ? In a specific country
- ✓ No preference
Country: Canada; United Kingdom; United States
Must archiving be free of charge?
- ? Yes, free only
- ? A fee is fine
FAIRsharing has no information on this.
Which country?
✓ 2 of 15 in the list ✗ excludes 13
Country: Canada; United Kingdom; United States