Knowledgebase and repository · FAIRsharing

China National GeneBank DataBase (CNGBdb)

The China National GeneBank database (CNGBdb) is a unified platform for biological big data sharing and application services. At present, CNGBdb has integrated a large amount of internal and external biological data from resources such as CNGB, NCBI, and the EBI. There are a number of sub databases in CNGBdb, including literature, variation, gene, genome, protein, sequence, organism, project, sample, experiment, run, and assembly. Based on underlying big data and cloud computing technologies, it provides various data services, including archive, analysis, knowledge search, management authorization of biological data. CNGBdb adopts data structures and standards of international omics, health, and medicine, such as The International Nucleotide Sequence Database Collaboration (INSDC), The Global Alliance for Genomics and Health GA4GH (GA4GH), Global Genome Biodiversity Network (GGBN), American College of Medical Genetics and Genomics (ACMG), and constructs standardized data and structures with wide compatibility. All public data and data services provided by CNGBdb are freely available to all users worldwide. CNGB Sequence Archive (CNSA) is the bionomics data repository of CNGBdb. CNGB Sequence Archive (CNSA) is a convenient and efficient archiving system of multi-omics data in life science, which provides archiving services for raw sequencing reads and further analyzed results. CNSA follows the international data standards for omics data, and supports online and batch submission of multiple data types such as Project, Sample, Experiment/Run, Assembly, Variation, Metabolism, Single cell, and Sequence. Moreover, CNSA has achieved the correlation of sample entities, sample information, and analyze data on some projects. Its data submission service can be used as a supplement to the literature publishing process to support early data sharing.

Website
Record in FAIRsharing (doi:10.25504/FAIRsharing.9btRvC)
Subjects: Comparative Genomics, Data Integration, Data Management, Epigenomics, Genomics, Life Science, Metabolomics, Metagenomics, Omics, Proteomics, Transcriptomics

Documentation, events and training

bio.tools API and tool documentation

CNGBdb (same homepage)

What is known per question

The questions of the decision tree, with what FAIRsharing says about this repository. ✓ supported, ✗ excluded, ? not known.

What kind of data do you want to archive?

? Spectra
? Crystal structures
? Computational chemistry
? Catalysis
? Compounds and reactions
? Bioassays and chemical biology
? Materials and polymers
? Images and microscopy
? Something else

Subjects: Comparative Genomics; Data Integration; Data Management; Epigenomics; Genomics; Life Science; Metabolomics; Metagenomics; Omics; Proteomics; Transcriptomics

Domains: Data analysis; Experimental measurement; Nucleic acid sequence; Resource metadata; Taxonomic classification; data storage; read