Knowledgebase · FAIRsharing
SignaLink 3.0 (SLK3)
SignaLink 3.0 is an integrated resource to analyze signaling pathway cross-talks, transcription factors, miRNAs and regulatory enzymes. Main features: - A signaling network resource with known and predicted information for human and model organisms - Manually curated dataset of major signaling pathways - including curated data from resources such as ACSN, InnateDB, Reactome and Signor - Extends pathways with integrated regulatory resources to contain pathway-specific transcription factors, miRNA, scaffolds and post translational modifying enzymes - Proteins are classified by pathway position (core/non-core) and function (ligand, receptor, mediator, etc.) - Signaling interactions are directed and labeled with PubMed IDs of the publications of experimental evidence - A multi-layered network structure allows the selection of user-specific details - Allows filtering based on tissue or sub-cellular localization - Supporting downloads in csv or psimi tab formats
- Website
- Record in FAIRsharing (doi:10.25504/FAIRsharing.ef9ca3)
- Subjects: Biomedical Science, Drug Discovery, Life Science
Documentation, events and training
bio.tools API and tool documentation
- SignaLink3 (same homepage)
What is known per question
The questions of the decision tree, with what FAIRsharing says about this repository. ✓ supported, ✗ excluded, ? not known. Your own answers are marked.
What kind of data do you want to archive?
- ? Spectra
- ? Crystal structures
- ? Computational chemistry
- ? Catalysis
- ? Compounds and reactions
- ? Bioassays and chemical biology
- ? Materials and polymers
- ? Images and microscopy
- ? Something else
Subjects: Biomedical Science; Drug Discovery; Life Science
Domains: Protein interactions; Transcription Factor; biological regulation; enzyme; miRNA; signaling
Does the journal or publisher you publish with require or recommend a repository?
- ? Yes
- ? No
- ? I do not know
FAIRsharing has no information on this.
Which discipline does your data belong to?
FAIRsharing has no information on this.
Which publisher?
FAIRsharing has no information on this.
Does your funder have requirements for where data is archived?
- ? Yes
- ? No
- ? I do not know
FAIRsharing has no information on this.
Which funder?
FAIRsharing has no information on this.
Does your institution offer a data repository?
- ? Yes
- ? No
- ? I do not know
FAIRsharing has no information on this.
Which institution?
FAIRsharing has no information on this.
Can your data be shared openly?
- ✓ Yes, openly available
- ? Yes, after an embargo
- ✗ Only with restrictions
Data access: open
Data deposition: not applicable
How large is your dataset?
- ? Less than 1 GB
- ? 1 GB to 50 GB
- ? 50 GB to 1 TB
- ? More than 1 TB
FAIRsharing has no information on this.
Why can the data not be open?
- ? It contains personal data
- ? Commercial or intellectual property reasons
- ? Safety or security concerns
- ? A data sharing agreement limits it
FAIRsharing has no information on this.
Under which license do you want to share the data?
- ? CC0 / public domain
- ? CC BY
- ? Another open license
- ? Not decided yet
FAIRsharing has no information on this.
Do you need a persistent identifier, such as a DOI, for citing the data?
- ? Yes, a DOI
- ? Any persistent identifier will do
- ? No
FAIRsharing has no information on this.
Must the data be stored in a specific region?
- ? In the European Union
- ? In a specific country
- ✓ No preference
Country: Hungary; United Kingdom
Must archiving be free of charge?
- ? Yes, free only
- ? A fee is fine
FAIRsharing has no information on this.
Which country?
✓ 1 of 15 in the list ✗ excludes 14
Country: Hungary; United Kingdom