Knowledgebase and repository · FAIRsharing
METASPACE
SpectraBioassays and chemical biologyImages and microscopy
The METASPACE platform hosts an engine for metabolite annotation of imaging mass spectrometry data as well as a spatial metabolite knowledgebase of the metabolites from thousands of public datasets provided by the community. The METASPACE engine open online platform provides tools for integrated into validated workflows for clinical use exploratory analysis. Submit or interact with high-resolution imaging mass spectrometry (HR imaging MS) spatial data, explore knowledgeable annotations from all datasets using the interactive interface, collaborate with project team members on dataset annotation, or export the metabolite annotations to mine hundreds of thousands of metabolites found in community-provided datasets.
- Website
- Record in FAIRsharing (doi:10.25504/FAIRsharing.bae0ec)
- Subjects: Cell Biology, Lipidomics, Metabolomics, Molecular biology
Documentation, events and training
bio.tools API and tool documentation
- METASPACE (same homepage)
What is known per question
The questions of the decision tree, with what FAIRsharing says about this repository. ✓ supported, ✗ excluded, ? not known. Your own answers are marked.
What kind of data do you want to archive?
- ✓ Spectra
- ? Crystal structures
- ? Computational chemistry
- ? Catalysis
- ? Compounds and reactions
- ✓ Bioassays and chemical biology
- ? Materials and polymers
- ✓ Images and microscopy
- ? Something else
Subjects: Cell Biology; Lipidomics; Metabolomics; Molecular biology
Domains: Bioimaging; Mass spectrum; lipid; mass spectrometry assay; metabolite
Does the journal or publisher you publish with require or recommend a repository?
- ? Yes
- ? No
- ? I do not know
FAIRsharing has no information on this.
Which discipline does your data belong to?
FAIRsharing has no information on this.
Which publisher?
FAIRsharing has no information on this.
Does your funder have requirements for where data is archived?
- ? Yes
- ? No
- ? I do not know
FAIRsharing has no information on this.
Which funder?
FAIRsharing has no information on this.
Does your institution offer a data repository?
- ? Yes
- ? No
- ? I do not know
FAIRsharing has no information on this.
Which institution?
FAIRsharing has no information on this.
Can your data be shared openly?
- ✓ Yes, openly available
- ? Yes, after an embargo
- ✗ Only with restrictions
Data access: open
Data deposition: controlled: Create User Account
How large is your dataset?
- ? Less than 1 GB
- ? 1 GB to 50 GB
- ? 50 GB to 1 TB
- ? More than 1 TB
FAIRsharing has no information on this.
Why can the data not be open?
- ? It contains personal data
- ? Commercial or intellectual property reasons
- ? Safety or security concerns
- ? A data sharing agreement limits it
FAIRsharing has no information on this.
Under which license do you want to share the data?
- ? CC0 / public domain
- ✓ CC BY
- ? Another open license
- ? Not decided yet
Licences: Apache License 2.0; Creative Commons Attribution 4.0 International (CC BY 4.0); Metaspace Privacy and Personal Data; Metaspace Terms of Service; EMBL Legal Services
Do you need a persistent identifier, such as a DOI, for citing the data?
- ? Yes, a DOI
- ? Any persistent identifier will do
- ? No
FAIRsharing has no information on this.
Must the data be stored in a specific region?
- ? In the European Union
- ? In a specific country
- ✓ No preference
Country: Worldwide
Must archiving be free of charge?
- ? Yes, free only
- ? A fee is fine
FAIRsharing has no information on this.
Which country?
Country: Worldwide