Knowledgebase and repository · FAIRsharing
NIH Human BioMolecular Atlas Program Data Portal (HuBMAP)
Bioassays and chemical biologyImages and microscopy
The HuBMAP Data Portal is the central resource for discovery, visualization, and download of single-cell tissue data generated by the Human BioMolecular Atlas Program consortium. HuBMAP tools and maps are openly available, inclusice of a standardized data curation and processing workflow ensure that only high quality is released. The HuBMAP Data Portal aims to be an open map of the human body at the cellular level to accelerate efforts to understand the relationships between the organization of cells and tissues, biological function, and human health from fresh, fixed, or frozen healthy human tissue using in situ and dissociative techniques that have high-spatial resolution data.
- Website
- Record in FAIRsharing (doi:10.25504/FAIRsharing.2fe38c)
- Subjects: Bioinformatics, Biomedical Science, Cardiology, Clinical Studies, Data Integration, Data Management, Endocrinology, Functional Genomics, Gastroenterology, Health Science, Hematology, Human Biology, Metabolomics, Nephrology, Omics, Otolaryngology, Proteomics, Systems Medicine, Transcriptomics, Translational Medicine, data visualization
Documentation, events and training
bio.tools API and tool documentation
- Human BioMolecular Atlas Program Data Portal (same homepage)
TeSS Training materials (1)
TeSS Events (1)
What is known per question
The questions of the decision tree, with what FAIRsharing says about this repository. ✓ supported, ✗ excluded, ? not known. Your own answers are marked.
What kind of data do you want to archive?
- ? Spectra
- ? Crystal structures
- ? Computational chemistry
- ? Catalysis
- ? Compounds and reactions
- ✓ Bioassays and chemical biology
- ? Materials and polymers
- ✓ Images and microscopy
- ? Something else
Subjects: Bioinformatics; Biomedical Science; Cardiology; Clinical Studies; Data Integration; Data Management; Endocrinology; Functional Genomics; Gastroenterology; Health Science; Hematology; Human Biology; Metabolomics; Nephrology; Omics; Otolaryngology; Proteomics; Systems Medicine; Transcriptomics; Translational Medicine; data visualization
Domains: Biobank; Bioimaging; Data analysis; Expression data; FAIR; Protein-Protein Interaction; histological assay; molecular_function; sequencing assay; tissue
Does the journal or publisher you publish with require or recommend a repository?
- ? Yes
- ? No
- ? I do not know
FAIRsharing has no information on this.
Which discipline does your data belong to?
FAIRsharing has no information on this.
Which publisher?
FAIRsharing has no information on this.
Does your funder have requirements for where data is archived?
- ? Yes
- ? No
- ? I do not know
FAIRsharing has no information on this.
Which funder?
FAIRsharing has no information on this.
Does your institution offer a data repository?
- ? Yes
- ? No
- ? I do not know
FAIRsharing has no information on this.
Which institution?
FAIRsharing has no information on this.
Can your data be shared openly?
- ✗ Yes, openly available
- ? Yes, after an embargo
- ✓ Only with restrictions
Data access: controlled: HuBMAP Data Access Policies
Data deposition: controlled: HuBMAP Data Use Agreement
How large is your dataset?
- ? Less than 1 GB
- ? 1 GB to 50 GB
- ? 50 GB to 1 TB
- ? More than 1 TB
FAIRsharing has no information on this.
Why can the data not be open?
- ? It contains personal data
- ? Commercial or intellectual property reasons
- ? Safety or security concerns
- ? A data sharing agreement limits it
FAIRsharing has no information on this.
Under which license do you want to share the data?
- ? CC0 / public domain
- ✓ CC BY
- ? Another open license
- ? Not decided yet
Licences: Creative Commons Attribution 4.0 International (CC BY 4.0); Apache License 2.0; MIT License
Do you need a persistent identifier, such as a DOI, for citing the data?
- ? Yes, a DOI
- ? Any persistent identifier will do
- ? No
FAIRsharing has no information on this.
Must the data be stored in a specific region?
- ✗ In the European Union
- ? In a specific country
- ✓ No preference
Country: United States
Must archiving be free of charge?
- ? Yes, free only
- ? A fee is fine
FAIRsharing has no information on this.
Which country?
✓ 1 of 15 in the list ✗ excludes 14
Country: United States