Knowledgebase · FAIRsharing
Metalloenzyme Data Bank and Analysis (MeDBA)
Computational chemistryCompounds and reactionsImages and microscopy
The Metalloenzyme Data Bank and Analysis (MeDBA) is a metalloenzyme-focused data bank and analysis tools relevant to research areas such as biochemistry, structural biology, synthetic biology, computational chemistry and drug discovery. MeDBA integrates comprehensive information of metalloenzymes (e.g., related diseases, structures, metal sites), ligands (e.g., bioactive molecules, substrates/products, drugs and drug candidates) and metalloenzyme-ligand associations (e.g., MBP, metalloenzyme-ligand complexes), which are provided for users to freely search, browse, download and analyze. Metalloenzyme-specific analysis servers are also provided, including 3D visualization of metalloenzyme structures, structure/metal active site comparison, substructure search for ligands and MBPs, and metalloenzyme profiling.
- Website
- Record in FAIRsharing (doi:10.25504/FAIRsharing.6f02c3)
- Subjects: Biochemistry, Computational Chemistry, Drug Development, Drug Discovery, Structural Biology, Synthetic Biology
Documentation, events and training
bio.tools API and tool documentation
- MeDBA (same homepage)
What is known per question
The questions of the decision tree, with what FAIRsharing says about this repository. ✓ supported, ✗ excluded, ? not known. Your own answers are marked.
What kind of data do you want to archive?
- ? Spectra
- ? Crystal structures
- ✓ Computational chemistry
- ? Catalysis
- ✓ Compounds and reactions
- ? Bioassays and chemical biology
- ? Materials and polymers
- ✓ Images and microscopy
- ? Something else
Subjects: Biochemistry; Computational Chemistry; Drug Development; Drug Discovery; Structural Biology; Synthetic Biology
Domains: Chemical structure image; Drug structure; Reaction data; functional domain
Does the journal or publisher you publish with require or recommend a repository?
- ? Yes
- ? No
- ? I do not know
FAIRsharing has no information on this.
Which discipline does your data belong to?
FAIRsharing has no information on this.
Which publisher?
FAIRsharing has no information on this.
Does your funder have requirements for where data is archived?
- ? Yes
- ? No
- ? I do not know
FAIRsharing has no information on this.
Which funder?
FAIRsharing has no information on this.
Does your institution offer a data repository?
- ? Yes
- ? No
- ? I do not know
FAIRsharing has no information on this.
Which institution?
FAIRsharing has no information on this.
Can your data be shared openly?
- ✓ Yes, openly available
- ? Yes, after an embargo
- ✗ Only with restrictions
Data access: open
Data deposition: not applicable
How large is your dataset?
- ? Less than 1 GB
- ? 1 GB to 50 GB
- ? 50 GB to 1 TB
- ? More than 1 TB
FAIRsharing has no information on this.
Why can the data not be open?
- ? It contains personal data
- ? Commercial or intellectual property reasons
- ? Safety or security concerns
- ? A data sharing agreement limits it
FAIRsharing has no information on this.
Under which license do you want to share the data?
- ? CC0 / public domain
- ? CC BY
- ? Another open license
- ? Not decided yet
FAIRsharing has no information on this.
Do you need a persistent identifier, such as a DOI, for citing the data?
- ? Yes, a DOI
- ? Any persistent identifier will do
- ? No
FAIRsharing has no information on this.
Must the data be stored in a specific region?
- ✗ In the European Union
- ? In a specific country
- ✓ No preference
Country: China
Must archiving be free of charge?
- ? Yes, free only
- ? A fee is fine
FAIRsharing has no information on this.
Which country?
? not known for the list ✗ excludes 15
Country: China