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IMP: bridging the gap for medicinal plant genomics (IMP)

Medicinal plants have garnered significant attention in ethnomedicine and traditional medicine due to their potential antitumor, anti-inflammatory and antioxidant properties. Recent advancements in genome sequencing and synthetic biology have revitalized interest in natural products. Despite the availability of sequenced genomes and transcriptomes of these plants, the absence of publicly accessible gene annotations and tabular formatted gene expression data has hindered their effective utilization. IMP (Integrated Medicinal Plantomics) is a freely accessible platform storing genetic, genome assembly, and transcriptome sequencing data encompassing various organs, tissues, developmental stages and stimulations.

Website
Record in FAIRsharing (doi:10.25504/FAIRsharing.5ff3e9)
Subjects: Botany, Drug Discovery, Molecular Chemistry, Omics, Plant Ecology, Plant Nutrition, Synthetic Biology, Transcriptomics

Documentation, events and training

bio.tools API and tool documentation

IMP (same homepage)

What is known per question

The questions of the decision tree, with what FAIRsharing says about this repository. ✓ supported, ✗ excluded, ? not known.

What kind of data do you want to archive?

? Spectra
? Crystal structures
? Computational chemistry
? Catalysis
? Compounds and reactions
? Bioassays and chemical biology
? Materials and polymers
? Images and microscopy
? Something else

Subjects: Botany; Drug Discovery; Molecular Chemistry; Omics; Plant Ecology; Plant Nutrition; Synthetic Biology; Transcriptomics

Does the journal or publisher you publish with require or recommend a repository?

? Yes
? No
? I do not know

FAIRsharing has no information on this.

Which discipline does your data belong to?

FAIRsharing has no information on this.

Which publisher?

FAIRsharing has no information on this.

Does your funder have requirements for where data is archived?

? Yes
? No
? I do not know

FAIRsharing has no information on this.

Which funder?

FAIRsharing has no information on this.

Does your institution offer a data repository?

? Yes
? No
? I do not know

FAIRsharing has no information on this.

Which institution?

FAIRsharing has no information on this.

Can your data be shared openly?

✓ Yes, openly available
? Yes, after an embargo
✗ Only with restrictions

Data access: open

Data deposition: not applicable

How large is your dataset?

? Less than 1 GB
? 1 GB to 50 GB
? 50 GB to 1 TB
? More than 1 TB

FAIRsharing has no information on this.

Why can the data not be open?

? It contains personal data
? Commercial or intellectual property reasons
? Safety or security concerns
? A data sharing agreement limits it

FAIRsharing has no information on this.

Under which license do you want to share the data?

? CC0 / public domain
? CC BY
? Another open license
? Not decided yet

Licences: BSD 3-Clause "New" or "Revised" License

Do you need a persistent identifier, such as a DOI, for citing the data?

? Yes, a DOI
? Any persistent identifier will do
? No

FAIRsharing has no information on this.

Must the data be stored in a specific region?

✗ In the European Union
? In a specific country
✓ No preference

Country: China

Must archiving be free of charge?

? Yes, free only
? A fee is fine

FAIRsharing has no information on this.

Which country?

? not known for the list ✗ excludes 15

Country: China